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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoplSpeckle type BTB/POZ protein like b. (395 aa)    
Predicted Functional Partners:
cul3
Cullin 3a; Belongs to the cullin family.
   
 0.997
gli2
Uncharacterized protein.
   
 0.974
gli1
GLI family zinc finger 1.
   
 0.974
gli3
GLI family zinc finger 3.
   
 0.974
LOC101077858
GLI family zinc finger 2b.
   
 0.974
sufu
Suppressor of fused homolog.
     
 0.937
cacul1
Cullin domain-containing protein; Belongs to the cullin family.
   
 0.915
SPOP
Speckle type BTB/POZ protein.
  
  
 
0.901
ENSTRUP00000049435
GLIS family zinc finger 3.
   
 0.758
glis1
GLIS family zinc finger 1b.
   
 0.758
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.