Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
rbm5RNA binding motif protein 5. (842 aa)    
Predicted Functional Partners:
SUGP1
SURP and G-patch domain containing 1.
   
 0.901
H2SWV4_TAKRU
RRM domain-containing protein.
   
 0.809
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.809
ik
IK cytokine.
   
  0.795
ccar1
Cell division cycle and apoptosis regulator 1.
   
 0.772
rbm25
RNA binding motif protein 25b.
   
 
 0.758
sf3b4
Splicing factor 3b, subunit 4.
    
 
 0.744
srsf7
Serine and arginine rich splicing factor 7a.
   
 
 0.741
rbm39
RNA binding motif protein 39b.
   
 0.736
ENSTRUP00000056044
Uncharacterized protein.
   
 0.736
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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