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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptrh2Peptidyl-tRNA hydrolase 2. (187 aa)    
Predicted Functional Partners:
park7
Parkinson protein 7.
   
  
 0.660
HP1BP3
Heterochromatin protein 1 binding protein 3.
      
 0.638
usp30
Ubiquitin carboxyl-terminal hydrolase.
    
  0.602
setd5
SET domain containing 5.
      
 0.551
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
  
 0.542
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
     
 0.510
lrrc7
Leucine rich repeat containing 7.
      
 0.507
erbin
Erbb2 interacting protein.
      
 0.507
vdac1
Voltage-dependent anion channel 1.
   
 
  0.505
ide
Insulin-degrading enzyme; Belongs to the peptidase M16 family.
     
 0.499
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.