Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arhgap39Rho GTPase activating protein 39. (1013 aa)    
Predicted Functional Partners:
LOC101072112
Tetraspanin.
     
 0.546
ipo5
Karyopherin (importin) beta 3.
    
 
 0.534
rpl3
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 0.519
RPL3L
Ribosomal protein L3 like.
    
 0.519
tspan9
Tetraspanin.
     
 0.517
LOC105417845
Ca2+-dependent activator protein for secretion b.
      
 0.515
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
     
 0.513
LOC101073733
Uncharacterized protein.
    
 0.501
LOC101067723
Cell division cycle 42.
    
 0.501
elmod3
ELMO/CED-12 domain containing 3.
      
 0.491
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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