Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vps54VPS54 subunit of GARP complex. (974 aa)    
Predicted Functional Partners:
vps53
VPS53 subunit of GARP complex.
   
 0.999
vps52
VPS52 subunit of GARP complex.
    
 0.998
vps51
VPS51 subunit of GARP complex.
    
 0.997
eipr1
EARP complex and GARP complex interacting protein 1.
    
 
 0.984
stx16
Syntaxin 16; Belongs to the syntaxin family.
    
 0.947
vps50
VPS50 EARP/GARPII complex subunit.
    
 
 0.939
ENSTRUP00000072844
Uncharacterized protein LOC115248906 isoform X1.
    
 
 0.939
cog1
Component of oligomeric golgi complex 1.
     
 0.871
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.869
cog4
Component of oligomeric golgi complex 4.
    
 0.858
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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