STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101071427SRY-box transcription factor 10. (499 aa)    
Predicted Functional Partners:
foxd3
Forkhead box D3.
    
 0.948
OLIG2
Class B basic helix-loop-helix protein 1/6/7.
   
 
 0.884
LOC101069631
Melanocyte inducing transcription factor a.
    
 0.858
dct
Dopachrome tautomerase.
    
 0.799
pax3
Paired box 3b.
   
 0.768
LOC101068191
Paired box 3a.
   
 0.767
egr2
Early growth response 2b.
    
 0.761
ENSTRUP00000057273
Oligodendrocyte transcription factor 1.
   
 
 0.728
snai2
Snail family zinc finger 2.
    
 
 0.721
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.716
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.