Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arntlAryl hydrocarbon receptor nuclear translocator-like 1a. (608 aa)    
Predicted Functional Partners:
sirt1
Sirtuin 1.
    
 0.891
LOC101072059
Cryptochrome circadian regulator 1a.
   
 0.874
CLOCK
Clock circadian regulator a.
   
0.868
ENSTRUP00000077772
Cryptochrome circadian regulator 2.
   
 0.839
LOC101065307
Neuronal PAS domain protein 2.
   
 0.837
LOC115248360
Cryptochrome circadian regulator 2.
   
 0.837
LOC101078879
Clock circadian regulator b.
   
 0.837
LOC101079934
Cryptochrome circadian regulator 3a.
   
 0.823
LOC101062553
Cryptochrome circadian regulator 5.
   
 0.804
BHLHE40
Basic helix-loop-helix family member e40.
    
 0.804
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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