Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rcn2Reticulocalbin 2. (320 aa)    
Predicted Functional Partners:
aspm
ASH domain-containing protein.
    
 
 0.845
scaper
S-phase cyclin A-associated protein in the ER.
      
 0.720
LOC101074851
Neuronal pentraxin receptor a.
    
 
 0.705
CLDN20
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
      
 0.696
peak1
Pseudopodium-enriched atypical kinase 1.
      
 0.690
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
   0.635
LOC101063435
Family with sequence similarity 124B.
     
 0.603
chp1
Calcineurin-like EF-hand protein 1.
    
 
 0.584
LOC101075888
Sidoreflexin.
   
 
 0.580
LOC101061127
Sidoreflexin.
   
 
 0.580
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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