Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077948Nuclear receptor subfamily 1, group D, member 2b. (573 aa)    
Predicted Functional Partners:
ncor2
Nuclear receptor corepressor 2.
    
 0.800
ncor1
Nuclear receptor corepressor 1.
    
 0.800
LOC101073582
Nuclear receptor subfamily 1, group H, member 5.
   
 0.762
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
   
 0.762
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
 0.762
ppard
Uncharacterized protein.
    
 0.751
LOC101065307
Neuronal PAS domain protein 2.
    
 0.685
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
    
 0.684
LOC101065207
Aryl hydrocarbon receptor nuclear translocator-like 2.
    
 0.684
LOC101073711
Uncharacterized protein.
   
 
 0.671
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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