STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101072592Synaptotagmin IXa. (563 aa)    
Predicted Functional Partners:
LOC101077791
Uncharacterized protein.
     
 0.597
syt4
Synaptotagmin IV.
    
  0.510
syt11
Synaptotagmin XIb.
    
  0.510
LOC101079537
Synaptotagmin Ia.
   
 0.508
LOC101072091
Uncharacterized protein.
   
 0.508
LOC101076615
Uncharacterized protein.
    
 0.498
LOC101062828
Synaptotagmin IIa.
    
 0.498
LOC101071071
Vesicle-associated membrane protein 8 (endobrevin).
     
 0.495
ubqln4
Ubiquilin 4.
    
  0.478
rps27a
Ribosomal protein S27a.
    
 0.452
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.