Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc39Leucine rich repeat containing 39. (352 aa)    
Predicted Functional Partners:
rtca
RNA 3'-terminal phosphate cyclase.
    
 
 0.770
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
      
 0.766
trmt13
tRNA methyltransferase 13 homolog.
      
 0.682
dph5
Diphthamide biosynthesis 5.
      
 0.654
sass6
SAS-6 centriolar assembly protein.
    
 0.643
slc30a7
Solute carrier family 30 member 7.
   
  
 0.612
cdc14a
Cell division cycle 14Ab.
    
 
 0.603
togaram1
Uncharacterized protein.
      
 0.602
ppp1r42
Protein phosphatase 1, regulatory subunit 42.
    
 0.590
acer1
Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.
      
 0.570
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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