Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pcdh12Protocadherin 12. (1169 aa)    
Predicted Functional Partners:
phlda2
Pleckstrin homology-like domain, family A, member 2.
      
 0.649
gbe1
Glucan (1,4-alpha-), branching enzyme 1b.
      
 0.574
adam10
ADAM metallopeptidase domain 10.
    
 0.507
slitrk4
SLIT and NTRK-like family, member 4.
     
 0.486
ncapd3
Condensin-2 complex subunit D3; Regulatory subunit of the condensin-2 complex, a complex which establishes mitotic chromosome architecture and is involved in physical rigidity of the chromatid axis.
    
 
 0.485
abi2
Abl-interactor 2b.
    
 0.467
ENSTRUP00000064254
non-SMC condensin I complex, subunit D2.
      
 0.461
ENSTRUP00000084963
annotation not available
      
 0.461
mmrn2
Uncharacterized protein.
   
 0.451
zranb3
Zinc finger, RAN-binding domain containing 3.
   
 
 0.432
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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