Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101067087Coiled-coil domain containing 88C. (1923 aa)    
Predicted Functional Partners:
cep89
Centrosomal protein of 89 kDa isoform X1.
    
   0.491
IFT122
Intraflagellar transport 122.
      
 0.451
tcf25
Transcription factor 25 (basic helix-loop-helix).
      
 0.439
Cep350
Centrosomal protein 350.
   
 
 0.425
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
 
 0.424
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 
 0.424
rnd3
Rho family GTPase 3a.
     
 0.420
Patj
InaD-like protein isoform X1.
    
 
 0.418
LOC101066651
CAP-Gly domain-containing protein.
    
   0.408
ENSTRUP00000085655
Dynactin subunit 1-like isoform X1.
    
   0.408
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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