cercam protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cercam

Cerebral endothelial cell adhesion molecule. (591 aa)

Predicted Functional Partners:

plod1

0.963

plod2

0.963

LOC101072864

0.902

colgalt2

0.902

LOC101063589

0.577

H2USN9_TAKRU

0.577

lhpp

0.517

ttyh1

0.497

LOC101062524

0.483

LOC101079628

0.483

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2USN9_TAKRU	LOC101072864	ENSTRUP00000073828	ENSTRUP00000028526	Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.	Collagen beta(1-O)galactosyltransferase 1.	0.577
H2USN9_TAKRU	cercam	ENSTRUP00000073828	ENSTRUP00000021396	Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.	Cerebral endothelial cell adhesion molecule.	0.577
H2USN9_TAKRU	colgalt2	ENSTRUP00000073828	ENSTRUP00000059461	Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.	Collagen beta(1-O)galactosyltransferase 2.	0.577
H2USN9_TAKRU	plod1	ENSTRUP00000073828	ENSTRUP00000064040	Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.	Fe2OG dioxygenase domain-containing protein.	0.610
H2USN9_TAKRU	plod2	ENSTRUP00000073828	ENSTRUP00000078534	Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.	Fe2OG dioxygenase domain-containing protein.	0.610
LOC101062524	LOC101072864	ENSTRUP00000027681	ENSTRUP00000028526	Uncharacterized protein.	Collagen beta(1-O)galactosyltransferase 1.	0.600
LOC101062524	LOC101079628	ENSTRUP00000027681	ENSTRUP00000080742	Uncharacterized protein.	Collagen, type VI, alpha 2.	0.902
LOC101062524	cercam	ENSTRUP00000027681	ENSTRUP00000021396	Uncharacterized protein.	Cerebral endothelial cell adhesion molecule.	0.483
LOC101062524	colgalt2	ENSTRUP00000027681	ENSTRUP00000059461	Uncharacterized protein.	Collagen beta(1-O)galactosyltransferase 2.	0.483
LOC101063589	LOC101072864	ENSTRUP00000064292	ENSTRUP00000028526	Wu:fc38h03.	Collagen beta(1-O)galactosyltransferase 1.	0.577
LOC101063589	cercam	ENSTRUP00000064292	ENSTRUP00000021396	Wu:fc38h03.	Cerebral endothelial cell adhesion molecule.	0.577
LOC101063589	colgalt2	ENSTRUP00000064292	ENSTRUP00000059461	Wu:fc38h03.	Collagen beta(1-O)galactosyltransferase 2.	0.577
LOC101063589	plod1	ENSTRUP00000064292	ENSTRUP00000064040	Wu:fc38h03.	Fe2OG dioxygenase domain-containing protein.	0.610
LOC101063589	plod2	ENSTRUP00000064292	ENSTRUP00000078534	Wu:fc38h03.	Fe2OG dioxygenase domain-containing protein.	0.610
LOC101072864	H2USN9_TAKRU	ENSTRUP00000028526	ENSTRUP00000073828	Collagen beta(1-O)galactosyltransferase 1.	Collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase.	0.577
LOC101072864	LOC101062524	ENSTRUP00000028526	ENSTRUP00000027681	Collagen beta(1-O)galactosyltransferase 1.	Uncharacterized protein.	0.600
LOC101072864	LOC101063589	ENSTRUP00000028526	ENSTRUP00000064292	Collagen beta(1-O)galactosyltransferase 1.	Wu:fc38h03.	0.577
LOC101072864	LOC101079628	ENSTRUP00000028526	ENSTRUP00000080742	Collagen beta(1-O)galactosyltransferase 1.	Collagen, type VI, alpha 2.	0.600
LOC101072864	cercam	ENSTRUP00000028526	ENSTRUP00000021396	Collagen beta(1-O)galactosyltransferase 1.	Cerebral endothelial cell adhesion molecule.	0.902
LOC101072864	colgalt2	ENSTRUP00000028526	ENSTRUP00000059461	Collagen beta(1-O)galactosyltransferase 1.	Collagen beta(1-O)galactosyltransferase 2.	0.951