Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101069187Uncharacterized protein. (297 aa)    
Predicted Functional Partners:
LOC101079511
RBR-type E3 ubiquitin transferase.
      
 0.629
sh3bgrl
SH3 domain binding glutamate-rich protein like.
      
 0.624
LOC101069738
Phosphatidylinositol 4-kinase, catalytic, alpha b; Belongs to the PI3/PI4-kinase family.
      
 0.510
acox3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
    
   0.491
fbxl15
F-box and leucine-rich repeat protein 15.
      
 0.476
fam126a
Family with sequence similarity 126 member A.
      
 0.454
trim45
Tripartite motif containing 45.
      
 0.445
efr3a
Protein EFR3 homolog A isoform X1.
      
 0.438
efr3b
EFR3 homolog Bb (S. cerevisiae).
      
 0.438
cuedc2
CUE domain containing 2.
      
 0.429
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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