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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
bicc1BicC family RNA binding protein 1a. (970 aa)    
Predicted Functional Partners:
trim71
Tripartite motif containing 71, E3 ubiquitin protein ligase.
      
 0.672
cpeb1
Cytoplasmic polyadenylation element binding protein 1b.
   
 
 0.640
pim3
Serine/threonine-protein kinase; Proto-oncogene with serine/threonine kinase activity involved in cell survival and cell proliferation. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PIM subfamily.
      
 0.629
LOC101066249
Centromere protein J.
      
 0.612
PSIP1
PC4 and SFRS1 interacting protein 1.
   
  
 0.572
ugdh
UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
      
 0.565
nptx1
Uncharacterized protein.
      
 0.556
gbe1
Glucan (1,4-alpha-), branching enzyme 1b.
      
 0.552
tent2
Terminal nucleotidyltransferase 2.
   
 
 0.550
sycp3
Synaptonemal complex protein 3.
      
 0.520
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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