Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnps1RNA binding protein S1, serine-rich domain. (282 aa)    
Predicted Functional Partners:
sap18
Sin3A-associated protein.
   
 0.986
pnn
Pinin, desmosome associated protein.
   
 0.980
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.979
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
 0.978
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.965
LOC101074005
Apoptotic chromatin condensation inducer 1b.
   
 0.963
LOC101061384
SAP domain-containing protein.
   
 0.963
LOC101074452
Mago homolog, exon junction complex subunit.
   
 0.953
srrm1
Serine/arginine repetitive matrix 1.
   
 0.951
LOC101064659
Uncharacterized protein.
    
 0.939
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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