zfand1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

zfand1

Zinc finger, AN1-type domain 1. (269 aa)

Predicted Functional Partners:

vcp

0.745

spata5l1

0.652

SPATA5

0.652

uba52

0.613

psmd1

0.564

rps27a

0.537

KATNAL2

0.535

ENSTRUP00000070399

0.535

zfand4

0.529

psmd6

0.517

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000070399	KATNAL2	ENSTRUP00000070399	ENSTRUP00000006052	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	0.714
ENSTRUP00000070399	psmd1	ENSTRUP00000070399	ENSTRUP00000044566	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.992
ENSTRUP00000070399	psmd6	ENSTRUP00000070399	ENSTRUP00000023419	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Proteasome 26S subunit, non-ATPase 6.	0.995
ENSTRUP00000070399	rps27a	ENSTRUP00000070399	ENSTRUP00000027679	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Ribosomal protein S27a.	0.840
ENSTRUP00000070399	uba52	ENSTRUP00000070399	ENSTRUP00000009801	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.983
ENSTRUP00000070399	vcp	ENSTRUP00000070399	ENSTRUP00000045516	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Valosin containing protein; Belongs to the AAA ATPase family.	0.416
ENSTRUP00000070399	zfand1	ENSTRUP00000070399	ENSTRUP00000021588	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Zinc finger, AN1-type domain 1.	0.535
ENSTRUP00000070399	zfand4	ENSTRUP00000070399	ENSTRUP00000009587	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	Zinc finger, AN1-type domain 4.	0.971
KATNAL2	ENSTRUP00000070399	ENSTRUP00000006052	ENSTRUP00000070399	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2 isoform X1.	0.714
KATNAL2	psmd1	ENSTRUP00000006052	ENSTRUP00000044566	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.992
KATNAL2	psmd6	ENSTRUP00000006052	ENSTRUP00000023419	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Proteasome 26S subunit, non-ATPase 6.	0.995
KATNAL2	rps27a	ENSTRUP00000006052	ENSTRUP00000027679	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Ribosomal protein S27a.	0.840
KATNAL2	uba52	ENSTRUP00000006052	ENSTRUP00000009801	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.983
KATNAL2	vcp	ENSTRUP00000006052	ENSTRUP00000045516	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Valosin containing protein; Belongs to the AAA ATPase family.	0.415
KATNAL2	zfand1	ENSTRUP00000006052	ENSTRUP00000021588	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Zinc finger, AN1-type domain 1.	0.535
KATNAL2	zfand4	ENSTRUP00000006052	ENSTRUP00000009587	Katanin catalytic subunit A1 like 2; Belongs to the AAA ATPase family.	Zinc finger, AN1-type domain 4.	0.971
SPATA5	psmd1	ENSTRUP00000066434	ENSTRUP00000044566	ATPase family protein 2 homolog.	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family.	0.754
SPATA5	psmd6	ENSTRUP00000066434	ENSTRUP00000023419	ATPase family protein 2 homolog.	Proteasome 26S subunit, non-ATPase 6.	0.698
SPATA5	rps27a	ENSTRUP00000066434	ENSTRUP00000027679	ATPase family protein 2 homolog.	Ribosomal protein S27a.	0.808
SPATA5	uba52	ENSTRUP00000066434	ENSTRUP00000009801	ATPase family protein 2 homolog.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.830