Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101075600Charged multivesicular body protein 4C. (233 aa)    
Predicted Functional Partners:
chmp7
Charged multivesicular body protein 7.
    
0.987
pdcd6ip
Programmed cell death 6 interacting protein.
   
 0.984
vps25
Vacuolar protein sorting 25 homolog.
    
 0.952
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.947
chmp2a
Charged multivesicular body protein 2A.
   
 0.945
vps36
Vacuolar protein sorting 36 homolog.
    
 0.944
reep1
Receptor accessory protein 1.
   
 0.940
LOC101067383
Charged multivesicular body protein 6a.
   
0.935
chmp6
Charged multivesicular body protein 6.
   
0.935
LOC101070321
Charged multivesicular body protein 5a.
   
 0.924
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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