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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101075600Charged multivesicular body protein 4C. (233 aa)    
Predicted Functional Partners:
pdcd6ip
Programmed cell death 6 interacting protein.
   
 0.985
chmp7
Charged multivesicular body protein 7.
    
0.982
reep1
Receptor accessory protein 1.
   
 0.941
chmp2a
Charged multivesicular body protein 2A.
   
 0.933
chmp4b
Charged multivesicular body protein 4Bb.
  
  
 
0.911
LOC101072878
Uncharacterized protein.
  
  
 
0.911
LOC101070321
Charged multivesicular body protein 5a.
  
0.908
ist1
IST1 factor associated with ESCRT-III.
    
 0.875
snf8
Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.864
vps25
Vacuolar protein sorting 25 homolog.
    
 0.855
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.