STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nif3l1NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae). (427 aa)    
Predicted Functional Partners:
vps28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
    
   0.896
tacc1a
TACC_C domain-containing protein.
    
   0.779
thoc7
THO complex 7.
   
 
 0.774
ppil3
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
  
 0.735
klhl30
Kelch-like family member 30.
   
  
 0.720
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
      
 0.717
cops2
COP9 signalosome subunit 2.
   
 
 0.660
LOC101062406
Glutaminyl-peptide cyclotransferase-like a.
    
   0.630
LOC101070647
Glutaminyl-peptide cyclotransferase.
    
   0.630
agl
Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase b.
    
   0.627
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.