Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sh3tc2SH3 domain and tetratricopeptide repeats 2. (1510 aa)    
Predicted Functional Partners:
FIG4
FIG4 phosphoinositide 5-phosphatase.
      
 0.913
SH3TC1
SH3 domain and tetratricopeptide repeats 1.
      
0.746
ap5s1
Adaptor related protein complex 5 subunit sigma 1.
      
 0.739
LOC101079078
Zinc finger and BTB domain containing 3.
      
 0.699
gdap1
Ganglioside induced differentiation associated protein 1.
      
 0.696
sbf2
SET binding factor 2.
      
 0.696
sbf1
Uncharacterized protein.
      
 0.696
itgb4
Integrin beta.
      
 0.632
lrsam1
Leucine rich repeat and sterile alpha motif containing 1.
      
 0.613
mtmr2
Myotubularin related protein 2.
      
 0.611
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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