Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
azin1bUncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (431 aa)    
Predicted Functional Partners:
oaz2
Uncharacterized protein.
    
 0.992
oaz1b
Uncharacterized protein.
    
 0.961
oaz1
Uncharacterized protein.
    
 0.961
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 0.777
LOC101078011
Cyclin I; Belongs to the cyclin family.
      
 0.766
sms
Spermine synthase.
  
 0.748
slc22a16
Uncharacterized protein.
   
 
 0.719
asns
Asparagine synthetase [glutamine-hydrolyzing].
  
  
 0.695
ubr5
Ubiquitin protein ligase E3 component n-recognin 5.
   
  
 0.673
LOC101071490
Arginase.
  
 
 0.670
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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