Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rfx2Regulatory factor X, 2 (influences HLA class II expression). (735 aa)    
Predicted Functional Partners:
LOC101073098
Fork-head domain-containing protein.
    
 
 0.786
LOC101067147
Forkhead box J1b.
    
 
 0.786
mcidas
Multicilin.
      
 0.725
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.683
btaf1
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated.
    
   0.642
myb
V-myb avian myeloblastosis viral oncogene homolog.
    
 
 0.613
BAZ1A
Bromodomain adjacent to zinc finger domain 1A.
    
 
 0.591
Dmtf1
Cyclin D binding myb-like transcription factor 1.
    
   0.590
cdc16
Cell division cycle 16 homolog (S. cerevisiae).
    
 
 0.586
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 
 0.584
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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