STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101070955T-box transcription factor 6. (599 aa)    
Predicted Functional Partners:
msgn1
Mesogenin 1.
   
 0.867
LOC105417312
BHLH domain-containing protein.
    
 0.784
wnt3a
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.753
H2VBZ6_TAKRU
Ripply transcriptional repressor 2.
   
 
 0.743
LOC101080064
Uncharacterized protein.
     
 0.736
meox1
Mesenchyme homeobox 1.
    
 
 0.642
sfrp5
Secreted frizzled-related protein 5.
   
  
 0.597
LOC101069649
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.585
lemd3
LEM domain containing 3.
    
 
 0.574
fgf8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.572
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: low (26%) [HD]