STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101070955T-box transcription factor 6. (599 aa)    
Predicted Functional Partners:
msgn1
Mesogenin 1.
   
 0.727
LOC101077697
Zinc finger, RAN-binding domain containing 1b.
      
 0.653
wnt3a
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.587
sfrp5
Secreted frizzled-related protein 5.
      
 0.576
LOC101080064
Uncharacterized protein.
      
 0.564
fgf8
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.555
ENSTRUP00000082979
Inhibin beta A chain-like.
     
 0.553
grk6
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
      
 0.546
lemd3
LEM domain containing 3.
    
 
 0.534
ZRANB1
Zinc finger RANBP2-type containing 1.
      
 0.532
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
Server load: medium (44%) [HD]