Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slit1Slit homolog 1a (Drosophila). (1546 aa)    
Predicted Functional Partners:
robo2
Roundabout, axon guidance receptor, homolog 2 (Drosophila).
   
 0.856
robo1
Roundabout, axon guidance receptor, homolog 1 (Drosophila).
   
 0.835
robo4
Roundabout, axon guidance receptor, homolog 4 (Drosophila).
   
 0.796
LOC101080067
Ig-like domain-containing protein.
   
 0.750
LOC101069145
Ig-like domain-containing protein.
   
 0.750
ENSTRUP00000074813
Ig-like domain-containing protein.
   
 0.750
robo3
Roundabout, axon guidance receptor, homolog 3 (Drosophila).
    
 0.741
abl2
Tyrosine-protein kinase.
    
 0.668
abl1
Tyrosine-protein kinase.
    
 0.668
LOC101061487
Ig-like domain-containing protein.
   
  
 0.573
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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