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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snip1FHA domain-containing protein. (305 aa)    
Predicted Functional Partners:
rbmx2
RNA binding motif protein X-linked 2.
   
 0.996
bud13
BUD13 homolog.
   
 0.989
snw1
SNW domain containing 1.
    
 
 0.983
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.978
sf3b1
Splicing factor 3b, subunit 1.
    
 
 0.963
cwc22
CWC22 spliceosome associated protein homolog.
   
 
 0.953
phf5a
PHD finger protein 5A.
    
 
 0.947
cwc27
CWC27 spliceosome associated cyclophilin.
   
 0.934
LOC101069147
Splicing factor 3a, subunit 3.
   
 
 0.931
rnf113a
Ring finger protein 113A.
   
 
 0.930
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.