Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101078223Von Willebrand factor A domain containing 1. (519 aa)    
Predicted Functional Partners:
tmem131l
Transmembrane protein 131-like isoform X2.
   
    0.558
fam20c1
FAM20C1.
    
  0.534
fam20c2
FAM20C2.
    
  0.534
fam20a
FAM20A.
     
  0.531
ak9
Adenylate kinase 9.
    
   0.521
fam20c3
FAM20C3.
    
  0.435
fam20c4
FAM20C4.
    
  0.435
LOC101063370
Solute carrier family 13 member 2.
      
 0.405
nudcd1
Uncharacterized protein.
    
 
 0.401
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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