Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdr19WD repeat domain 19. (1347 aa)    
Predicted Functional Partners:
wdr35
WD repeat-containing protein 35.
  
 0.999
ift140
Intraflagellar transport 140 homolog (Chlamydomonas).
   
0.999
IFT122
Intraflagellar transport 122.
   
 0.999
IFT43
Intraflagellar transport 43.
    
 0.998
H2RLT0_TAKRU
Tetratricopeptide repeat domain 21B.
   
 0.988
ENSTRUP00000077170
annotation not available
   
 0.988
ift80
Intraflagellar transport 80 homolog (Chlamydomonas).
   
 0.972
ift172
Uncharacterized protein.
   
 0.966
traf3ip1
TNF receptor-associated factor 3 interacting protein 1.
   
 0.962
cluap1
Clusterin associated protein 1.
    
 0.959
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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