Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mybl1V-myb avian myeloblastosis viral oncogene homolog-like 1. (765 aa)    
Predicted Functional Partners:
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.971
lin37
Lin-37 DREAM MuvB core complex component.
    
 0.969
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.968
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.918
LOC101074167
WD_REPEATS_REGION domain-containing protein.
   
 0.762
rbbp4
Retinoblastoma binding protein 4.
   
 0.762
foxm1
Forkhead box M1.
   
 0.713
LOC101073984
CREB binding protein a.
    
 
 0.680
mrpl15
Mitochondrial ribosomal protein L15.
    
 
 0.659
rbl1
Retinoblastoma-like 1 (p107).
    
 0.649
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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