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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hnrnprHeterogeneous nuclear ribonucleoprotein R. (618 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.694
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.671
LOC101076991
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.671
hnrnpc
RRM domain-containing protein.
   
 0.667
hnrnph1
Heterogeneous nuclear ribonucleoprotein H1.
   
 0.609
LOC105417833
RRM domain-containing protein.
   
 0.609
SRSF3
Serine and arginine rich splicing factor 3.
   
 0.609
HNRNPH3
Heterogeneous nuclear ribonucleoprotein H3.
   
 0.609
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.604
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.597
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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