Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALYREFAly/REF export factor. (267 aa)    
Predicted Functional Partners:
thoc3
THO complex 3.
   
 0.999
thoc1
THO complex 1.
    
 0.999
thoc2
THO complex 2.
   
 0.999
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.998
srrm1
Serine/arginine repetitive matrix 1.
   
 0.996
nxf1
Zgc:153681.
    
 0.995
thoc7
THO complex 7.
   
 0.991
thoc5
THO complex 5.
   
 0.991
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.989
chtop
Chromatin target of PRMT1a.
   
 0.987
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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