STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pou2f3POU domain protein. (398 aa)    
Predicted Functional Partners:
sp1
Sp1 transcription factor.
    
 0.775
snapc3
Small nuclear RNA activating complex, polypeptide 3.
    
  0.707
pou2af1
Uncharacterized protein.
    
 
 0.700
snapc5
Small nuclear RNA activating complex, polypeptide 5.
    
  0.699
c11h11orf53
Si:ch211-213d14.1.
    
 
 0.687
snapc1
Small nuclear RNA activating complex, polypeptide 1b.
    
 0.673
LOC101072938
Uncharacterized protein.
    
 0.673
LOC101062852
Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor).
   
 0.642
brca1
Uncharacterized protein.
    
   0.614
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
   0.586
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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