STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
atn1Atrophin 1. (1524 aa)    
Predicted Functional Partners:
nr2e1
Nuclear receptor subfamily 2, group E, member 1.
    
 0.783
NR2E3
Nuclear receptor subfamily 2 group E member 3.
    
 0.783
LOC101074738
Retinoblastoma binding protein 5.
    
 
 0.762
Fat2
Uncharacterized protein.
    
 0.629
wdr5
WD repeat domain 5.
    
   0.624
fat1
FAT atypical cadherin 1a.
    
 0.615
fat3
FAT atypical cadherin 3a.
    
 0.597
HDAC3
Histone deacetylase 3.
    
 0.517
brd7
Bromodomain containing 7.
      
 0.511
ccar1
Cell division cycle and apoptosis regulator 1.
      
 0.504
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.