STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdca5Cell division cycle associated 5. (249 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.993
smc1a
Structural maintenance of chromosomes protein.
   
 0.966
LOC101062448
WAPL cohesin release factor b.
    
 0.931
LOC101076637
WAPL cohesin release factor a.
    
 0.931
RBM20
RNA binding motif protein 20.
   
 0.917
LOC101078750
RAD21 cohesin complex component like 1.
    
 0.898
rad21
RAD21 cohesin complex component a.
    
 0.898
pds5a
PDS5 cohesin associated factor A.
    
 0.898
H2RSW2_TAKRU
PDS5 cohesin associated factor B.
    
 0.885
LOC101062518
Sister chromatid cohesion protein PDS5 homolog B-like.
    
 0.885
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.