adar protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

adar

Adenosine deaminase RNA specific. (1339 aa)

Predicted Functional Partners:

LOC100144317

0.942

LOC100144316

0.942

ilf3

0.890

dhx9

0.868

ADA

0.793

ada

0.793

LOC101066548

0.785

adat3

0.743

ncbp2

0.740

asns

0.720

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADA	adar	ENSTRUP00000076093	ENSTRUP00000022296	Adenosine deaminase.	Adenosine deaminase RNA specific.	0.793
LOC100144316	adar	ENSTRUP00000006486	ENSTRUP00000022296	Uncharacterized protein.	Adenosine deaminase RNA specific.	0.942
LOC100144316	dhx9	ENSTRUP00000006486	ENSTRUP00000088315	Uncharacterized protein.	DRBM domain-containing protein.	0.887
LOC100144316	ilf3	ENSTRUP00000006486	ENSTRUP00000065927	Uncharacterized protein.	Interleukin enhancer binding factor 3b.	0.963
LOC100144317	adar	ENSTRUP00000006484	ENSTRUP00000022296	Uncharacterized protein; Belongs to the protein kinase superfamily.	Adenosine deaminase RNA specific.	0.942
LOC100144317	dhx9	ENSTRUP00000006484	ENSTRUP00000088315	Uncharacterized protein; Belongs to the protein kinase superfamily.	DRBM domain-containing protein.	0.887
LOC100144317	ilf3	ENSTRUP00000006484	ENSTRUP00000065927	Uncharacterized protein; Belongs to the protein kinase superfamily.	Interleukin enhancer binding factor 3b.	0.963
LOC101066548	adar	ENSTRUP00000067312	ENSTRUP00000022296	Asparagine--tRNA ligase, cytoplasmic-like isoform X1.	Adenosine deaminase RNA specific.	0.785
LOC101066548	asns	ENSTRUP00000067312	ENSTRUP00000013503	Asparagine--tRNA ligase, cytoplasmic-like isoform X1.	Asparagine synthetase [glutamine-hydrolyzing].	0.834
ada	adar	ENSTRUP00000077569	ENSTRUP00000022296	Adenosine deaminase.	Adenosine deaminase RNA specific.	0.793
adar	ADA	ENSTRUP00000022296	ENSTRUP00000076093	Adenosine deaminase RNA specific.	Adenosine deaminase.	0.793
adar	LOC100144316	ENSTRUP00000022296	ENSTRUP00000006486	Adenosine deaminase RNA specific.	Uncharacterized protein.	0.942
adar	LOC100144317	ENSTRUP00000022296	ENSTRUP00000006484	Adenosine deaminase RNA specific.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.942
adar	LOC101066548	ENSTRUP00000022296	ENSTRUP00000067312	Adenosine deaminase RNA specific.	Asparagine--tRNA ligase, cytoplasmic-like isoform X1.	0.785
adar	ada	ENSTRUP00000022296	ENSTRUP00000077569	Adenosine deaminase RNA specific.	Adenosine deaminase.	0.793
adar	adat3	ENSTRUP00000022296	ENSTRUP00000032349	Adenosine deaminase RNA specific.	Adenosine deaminase tRNA specific 3.	0.743
adar	asns	ENSTRUP00000022296	ENSTRUP00000013503	Adenosine deaminase RNA specific.	Asparagine synthetase [glutamine-hydrolyzing].	0.720
adar	dhx9	ENSTRUP00000022296	ENSTRUP00000088315	Adenosine deaminase RNA specific.	DRBM domain-containing protein.	0.868
adar	ilf3	ENSTRUP00000022296	ENSTRUP00000065927	Adenosine deaminase RNA specific.	Interleukin enhancer binding factor 3b.	0.890
adar	ncbp2	ENSTRUP00000022296	ENSTRUP00000075961	Adenosine deaminase RNA specific.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.740