Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
tyw5tRNA-yW synthesizing protein 5. (330 aa)    
Predicted Functional Partners:
lcmt2
Leucine carboxyl methyltransferase 2.
 
    
 0.945
trmt5
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
      
 0.870
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
   0.848
trmt12
tRNA methyltransferase 12 homolog.
 
    
 0.795
LOC101075019
tRNA-yW synthesizing protein 1 homolog (S. cerevisiae).
      
 0.731
c1h2orf69
Zgc:153521.
      
 0.723
tyw3
tRNA-yW synthesizing protein 3 homolog (S. cerevisiae).
      
 0.720
JMJD8
Jumonji domain containing 8.
      
 0.706
RPL27A
Ribosomal protein L27a.
      
 0.692
slc38a7
Solute carrier family 38 member 7.
      
 0.668
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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