STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fyttd1Uncharacterized protein. (375 aa)    
Predicted Functional Partners:
LOC101070020
Zinc finger CCCH-type containing 11A.
     
 0.487
thoc7
THO complex 7.
     
 0.480
thoc3
THO complex 3.
     
 0.479
thoc6
THO complex 6.
     
 0.470
thoc5
THO complex 5.
     
 0.468
evc
Uncharacterized protein.
  
     0.445
mrpl17
Mitochondrial ribosomal protein L17.
      
 0.436
atp5if1
Uncharacterized protein.
      
 0.431
ncbp3
Nuclear cap binding subunit 3.
      
 0.426
NCBP1
Nuclear cap binding protein subunit 1.
     
 0.410
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.