pgap1 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pgap1

GPI inositol-deacylase isoform X1. (933 aa)

Predicted Functional Partners:

pigk

0.965

pigt

0.964

gpaa1

0.962

pigs

0.955

pigu

0.937

LOC101078401

0.877

tmed10

0.877

pign

0.580

pigb

0.575

pgap3

0.573

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101078401	pgap1	ENSTRUP00000027091	ENSTRUP00000022407	Transmembrane emp24 domain-containing protein 10; Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity).	GPI inositol-deacylase isoform X1.	0.877
LOC101078401	pigb	ENSTRUP00000027091	ENSTRUP00000045961	Transmembrane emp24 domain-containing protein 10; Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity).	Mannosyltransferase.	0.483
gpaa1	pgap1	ENSTRUP00000027629	ENSTRUP00000022407	Glycosylphosphatidylinositol anchor attachment 1.	GPI inositol-deacylase isoform X1.	0.962
gpaa1	pigb	ENSTRUP00000027629	ENSTRUP00000045961	Glycosylphosphatidylinositol anchor attachment 1.	Mannosyltransferase.	0.662
gpaa1	pigk	ENSTRUP00000027629	ENSTRUP00000082467	Glycosylphosphatidylinositol anchor attachment 1.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
gpaa1	pigs	ENSTRUP00000027629	ENSTRUP00000073361	Glycosylphosphatidylinositol anchor attachment 1.	Phosphatidylinositol glycan anchor biosynthesis, class S.	0.999
gpaa1	pigt	ENSTRUP00000027629	ENSTRUP00000052971	Glycosylphosphatidylinositol anchor attachment 1.	Phosphatidylinositol glycan anchor biosynthesis, class T.	0.999
gpaa1	pigu	ENSTRUP00000027629	ENSTRUP00000017515	Glycosylphosphatidylinositol anchor attachment 1.	Phosphatidylinositol glycan anchor biosynthesis, class U.	0.998
pgap1	LOC101078401	ENSTRUP00000022407	ENSTRUP00000027091	GPI inositol-deacylase isoform X1.	Transmembrane emp24 domain-containing protein 10; Involved in vesicular protein trafficking. Mainly functions in the early secretory pathway. Thought to act as cargo receptor at the lumenal side for incorporation of secretory cargo molecules into transport vesicles and to be involved in vesicle coat formation at the cytoplasmic side (By similarity).	0.877
pgap1	gpaa1	ENSTRUP00000022407	ENSTRUP00000027629	GPI inositol-deacylase isoform X1.	Glycosylphosphatidylinositol anchor attachment 1.	0.962
pgap1	pgap3	ENSTRUP00000022407	ENSTRUP00000011604	GPI inositol-deacylase isoform X1.	Post-GPI attachment to proteins factor 3; Involved in the lipid remodeling steps of GPI-anchor maturation; Belongs to the PGAP3 family.	0.573
pgap1	pigb	ENSTRUP00000022407	ENSTRUP00000045961	GPI inositol-deacylase isoform X1.	Mannosyltransferase.	0.575
pgap1	pigk	ENSTRUP00000022407	ENSTRUP00000082467	GPI inositol-deacylase isoform X1.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.965
pgap1	pign	ENSTRUP00000022407	ENSTRUP00000000513	GPI inositol-deacylase isoform X1.	Phosphatidylinositol glycan anchor biosynthesis, class N.	0.580
pgap1	pigs	ENSTRUP00000022407	ENSTRUP00000073361	GPI inositol-deacylase isoform X1.	Phosphatidylinositol glycan anchor biosynthesis, class S.	0.955
pgap1	pigt	ENSTRUP00000022407	ENSTRUP00000052971	GPI inositol-deacylase isoform X1.	Phosphatidylinositol glycan anchor biosynthesis, class T.	0.964
pgap1	pigu	ENSTRUP00000022407	ENSTRUP00000017515	GPI inositol-deacylase isoform X1.	Phosphatidylinositol glycan anchor biosynthesis, class U.	0.937
pgap1	tmed10	ENSTRUP00000022407	ENSTRUP00000046846	GPI inositol-deacylase isoform X1.	Transmembrane p24 trafficking protein 10.	0.877
pgap3	pgap1	ENSTRUP00000011604	ENSTRUP00000022407	Post-GPI attachment to proteins factor 3; Involved in the lipid remodeling steps of GPI-anchor maturation; Belongs to the PGAP3 family.	GPI inositol-deacylase isoform X1.	0.573
pgap3	pigk	ENSTRUP00000011604	ENSTRUP00000082467	Post-GPI attachment to proteins factor 3; Involved in the lipid remodeling steps of GPI-anchor maturation; Belongs to the PGAP3 family.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.440