Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rfx4Regulatory factor X, 4. (736 aa)    
Predicted Functional Partners:
ttll6
Tubulin tyrosine ligase-like family, member 6.
      
 0.709
mnx1
Motor neuron and pancreas homeobox 1.
      
 0.648
H2S325_TAKRU
Geranylgeranyl diphosphate synthase 1.
      
 0.632
LOC101070870
Geranylgeranyl pyrophosphate synthase-like isoform X1.
      
 0.632
tbx20
T-box transcription factor 20.
   
  
 0.626
atr
ATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.615
rfxap
Regulatory factor X-associated protein.
    
 
 0.599
rfxank
Regulatory factor X-associated ankyrin-containing protein.
    
 
 0.583
prkcd
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
      
 0.583
rp2
Protein XRP2; Acts as a GTPase-activating protein (GAP) for tubulin in concert with tubulin-specific chaperone C, but does not enhance tubulin heterodimerization.
    
 
 0.577
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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