LOC101068817 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101068817

ANK_REP_REGION domain-containing protein. (235 aa)

Predicted Functional Partners:

LOC101073968

0.581

ENSTRUP00000040395

0.581

ppp1cb

0.581

LOC101064018

0.581

LOC101069117

0.581

asb9

0.526

LOC101062948

0.522

LOC101072581

0.521

LOC101068875-2

0.514

asb5

0.505

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000040395	LOC101068817	ENSTRUP00000040395	ENSTRUP00000022473	annotation not available	ANK_REP_REGION domain-containing protein.	0.581
ENSTRUP00000040395	LOC101073968	ENSTRUP00000040395	ENSTRUP00000022114	annotation not available	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.896
ENSTRUP00000040395	ppp1cb	ENSTRUP00000040395	ENSTRUP00000048876	annotation not available	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.896
LOC101062948	LOC101068817	ENSTRUP00000052852	ENSTRUP00000022473	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.522
LOC101064018	LOC101068817	ENSTRUP00000052883	ENSTRUP00000022473	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	ANK_REP_REGION domain-containing protein.	0.581
LOC101064018	LOC101073968	ENSTRUP00000052883	ENSTRUP00000022114	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.989
LOC101064018	ppp1cb	ENSTRUP00000052883	ENSTRUP00000048876	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.989
LOC101068817	ENSTRUP00000040395	ENSTRUP00000022473	ENSTRUP00000040395	ANK_REP_REGION domain-containing protein.	annotation not available	0.581
LOC101068817	LOC101062948	ENSTRUP00000022473	ENSTRUP00000052852	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.522
LOC101068817	LOC101064018	ENSTRUP00000022473	ENSTRUP00000052883	ANK_REP_REGION domain-containing protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.581
LOC101068817	LOC101068875-2	ENSTRUP00000022473	ENSTRUP00000088425	ANK_REP_REGION domain-containing protein.	Ankyrin repeat domain-containing protein 1-like.	0.514
LOC101068817	LOC101069117	ENSTRUP00000022473	ENSTRUP00000058930	ANK_REP_REGION domain-containing protein.	Serine/threonine-protein phosphatase alpha-2 isoform-like.	0.581
LOC101068817	LOC101072581	ENSTRUP00000022473	ENSTRUP00000038205	ANK_REP_REGION domain-containing protein.	Leucine rich repeat neuronal 1.	0.521
LOC101068817	LOC101073968	ENSTRUP00000022473	ENSTRUP00000022114	ANK_REP_REGION domain-containing protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.581
LOC101068817	asb5	ENSTRUP00000022473	ENSTRUP00000040041	ANK_REP_REGION domain-containing protein.	Ankyrin repeat and SOCS box containing 5a.	0.505
LOC101068817	asb9	ENSTRUP00000022473	ENSTRUP00000056984	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.526
LOC101068817	ppp1cb	ENSTRUP00000022473	ENSTRUP00000048876	ANK_REP_REGION domain-containing protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.581
LOC101068875-2	LOC101068817	ENSTRUP00000088425	ENSTRUP00000022473	Ankyrin repeat domain-containing protein 1-like.	ANK_REP_REGION domain-containing protein.	0.514
LOC101069117	LOC101068817	ENSTRUP00000058930	ENSTRUP00000022473	Serine/threonine-protein phosphatase alpha-2 isoform-like.	ANK_REP_REGION domain-containing protein.	0.581
LOC101069117	LOC101073968	ENSTRUP00000058930	ENSTRUP00000022114	Serine/threonine-protein phosphatase alpha-2 isoform-like.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.896