close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sall1Spalt-like transcription factor 1a. (1303 aa)    
Predicted Functional Partners:
LOC101074260
POU domain protein.
   
 0.683
LOC101074167
WD_REPEATS_REGION domain-containing protein.
   
  0.617
rbbp4
Retinoblastoma binding protein 4.
   
  0.617
sall4
Spalt-like transcription factor 4.
    
0.576
bsx
Brain-specific homeobox.
   
 0.559
wdr73
Uncharacterized protein.
    
 0.555
shox
Short stature homeobox.
    
 
 0.548
map2k5
Mitogen-activated protein kinase kinase 5; Belongs to the protein kinase superfamily.
      
 0.540
VASH1
Vasohibin 1.
   
  
 0.531
irx5
Iroquois homeobox 5a.
      
 0.515
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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