Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam214aFamily with sequence similarity 214 member A. (1092 aa)    
Predicted Functional Partners:
capsl
Calcyphosine-like b.
      
 0.808
LOC101079115
One cut domain family member.
      
 0.765
MEX3D
Mex-3 RNA binding family member D.
      
 0.737
rsl24d1
Ribosomal L24 domain containing 1.
      
 0.724
onecut1
One cut homeobox 1.
      
 0.713
pigo
Phosphatidylinositol glycan anchor biosynthesis, class O.
      
 0.706
ap4e1
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
      
 0.705
lmbrd2
LMBR1 domain containing 2b.
      
 0.703
hmg20b
High mobility group 20B.
      
 0.675
LOC101077498
Guanine nucleotide binding protein (G protein), beta 5b.
   
  
 0.642
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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