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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105419062BTB domain containing 6. (541 aa)    
Predicted Functional Partners:
LOC101079676
Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.
      
 0.700
LOC115248454
RING-box protein 1.
    
 0.686
LOC101079814
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.686
cand1
Cullin-associated and neddylation-dissociated 1.
     
 0.616
cul3
Cullin 3a; Belongs to the cullin family.
    
 0.615
cul2
Cullin 2; Belongs to the cullin family.
    
 0.598
eloc
Elongin C paralog a; Belongs to the SKP1 family.
     
 0.584
kctd6
Potassium channel tetramerization domain containing 6b.
    
 0.558
LOC101073498
Uncharacterized protein.
   
 0.553
GAN
Gigaxonin.
     
 0.539
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.