Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
byslBystin-like. (435 aa)    
Predicted Functional Partners:
tsr1
TSR1 ribosome maturation factor.
   
 0.999
LOC101063739
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.999
ltv1
LTV1 ribosome biogenesis factor.
   
 0.999
rrp12
Ribosomal RNA processing 12 homolog.
   
 
 0.997
pno1
Partner of NOB1 homolog.
   
 0.997
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.997
riok2
RIO kinase 2 (yeast).
   
 0.994
bms1
BMS1 ribosome biogenesis factor.
   
 
 0.993
noc4l
Nucleolar complex associated 4 homolog.
   
 0.993
nol10
Nucleolar protein 10.
   
 
 0.992
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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