Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101065727Protocadherin-related 15b. (1853 aa)    
Predicted Functional Partners:
LOC101065208
Usher syndrome 1C.
   
 
 0.955
H2V7V0_TAKRU
Uncharacterized protein.
   
 0.929
cdhr2
Cadherin-related family member 2.
   
0.924
LOC101077248
Usher syndrome 1Ga (autosomal recessive).
   
 0.718
LOC101061371
LHFPL tetraspan subfamily member 5a.
   
 0.683
Lhfpl5
LHFPL tetraspan subfamily member 5b.
   
 0.683
H2ULS6_TAKRU
LHFPL tetraspan subfamily member 4a.
   
 0.635
LOC101076525
LHFPL tetraspan subfamily member 3.
   
 0.635
LOC101075015
LHFPL tetraspan subfamily member 3.
   
 0.635
nudcd1
Uncharacterized protein.
    
 
 0.604
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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