taf8 protein (Takifugu rubripes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

taf8

TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (308 aa)

Predicted Functional Partners:

taf10

0.999

taf3

0.999

taf11

0.999

taf2

0.999

taf6

0.999

taf13

0.999

taf9

0.998

taf7l

0.998

taf1

0.998

ENSTRUP00000058542

0.991

Your Current Organism:

Takifugu rubripes

NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSTRUP00000058542	taf1	ENSTRUP00000058542	ENSTRUP00000039888	General transcription factor IIA, 2.	Transcription initiation factor TFIID subunit.	0.976
ENSTRUP00000058542	taf10	ENSTRUP00000058542	ENSTRUP00000039300	General transcription factor IIA, 2.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.985
ENSTRUP00000058542	taf11	ENSTRUP00000058542	ENSTRUP00000050701	General transcription factor IIA, 2.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.992
ENSTRUP00000058542	taf13	ENSTRUP00000058542	ENSTRUP00000071053	General transcription factor IIA, 2.	Transcription initiation factor TFIID subunit 13.	0.990
ENSTRUP00000058542	taf2	ENSTRUP00000058542	ENSTRUP00000059494	General transcription factor IIA, 2.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.990
ENSTRUP00000058542	taf3	ENSTRUP00000058542	ENSTRUP00000043296	General transcription factor IIA, 2.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.979
ENSTRUP00000058542	taf6	ENSTRUP00000058542	ENSTRUP00000060692	General transcription factor IIA, 2.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.978
ENSTRUP00000058542	taf7l	ENSTRUP00000058542	ENSTRUP00000007157	General transcription factor IIA, 2.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.960
ENSTRUP00000058542	taf8	ENSTRUP00000058542	ENSTRUP00000022611	General transcription factor IIA, 2.	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.991
ENSTRUP00000058542	taf9	ENSTRUP00000058542	ENSTRUP00000002470	General transcription factor IIA, 2.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.986
taf1	ENSTRUP00000058542	ENSTRUP00000039888	ENSTRUP00000058542	Transcription initiation factor TFIID subunit.	General transcription factor IIA, 2.	0.976
taf1	taf10	ENSTRUP00000039888	ENSTRUP00000039300	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.995
taf1	taf11	ENSTRUP00000039888	ENSTRUP00000050701	Transcription initiation factor TFIID subunit.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
taf1	taf13	ENSTRUP00000039888	ENSTRUP00000071053	Transcription initiation factor TFIID subunit.	Transcription initiation factor TFIID subunit 13.	0.996
taf1	taf2	ENSTRUP00000039888	ENSTRUP00000059494	Transcription initiation factor TFIID subunit.	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
taf1	taf3	ENSTRUP00000039888	ENSTRUP00000043296	Transcription initiation factor TFIID subunit.	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto.	0.997
taf1	taf6	ENSTRUP00000039888	ENSTRUP00000060692	Transcription initiation factor TFIID subunit.	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.996
taf1	taf7l	ENSTRUP00000039888	ENSTRUP00000007157	Transcription initiation factor TFIID subunit.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.997
taf1	taf8	ENSTRUP00000039888	ENSTRUP00000022611	Transcription initiation factor TFIID subunit.	TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
taf1	taf9	ENSTRUP00000039888	ENSTRUP00000002470	Transcription initiation factor TFIID subunit.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.993