Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cnppd1Cyclin Pas1/PHO80 domain containing 1. (429 aa)    
Predicted Functional Partners:
lig4
DNA ligase.
    
 0.856
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 0.850
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 0.805
xrcc4
Uncharacterized protein.
    
 0.718
LOC101075334
Potassium large conductance calcium-activated channel subfamily M beta member 3.
      
 0.713
smim14
Small integral membrane protein 14.
      
 0.641
rcc1l
RCC1 like.
      
 0.633
lrpap1
Low density lipoprotein receptor-related protein associated protein 1.
      
 0.624
pcnp
PEST proteolytic signal containing nuclear protein.
      
 0.613
TMEM65
Transmembrane protein 65.
   
  
 0.598
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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