STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marchf6Membrane-associated ring finger (C3HC4) 6. (915 aa)    
Predicted Functional Partners:
LOC101075280
E3 ubiquitin-protein ligase MARCH6-like.
  
  
 
0.901
cnot2
CCR4-NOT transcription complex, subunit 2.
    
 
 0.710
LOC101069703
NOT2_3_5 domain-containing protein.
    
 
 0.710
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
    
 
 0.670
syvn1
Synovial apoptosis inhibitor 1, synoviolin.
    
 
 0.668
amfr
Autocrine motility factor receptor b.
    
 
 0.668
ENSTRUP00000070686
C1q and TNF related 12.
    
 
 0.659
spata5l1
Spermatogenesis associated 5-like 1.
    
 
 0.655
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 
 0.655
SPATA5
ATPase family protein 2 homolog.
    
 
 0.655
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.