Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101077719RBR-type E3 ubiquitin transferase. (1312 aa)    
Predicted Functional Partners:
ENSTRUP00000085001
annotation not available
   
 0.680
cwf19l2
CWF19 like cell cycle control factor 2.
      
 0.638
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.627
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.554
rnf7
Ring finger protein 7.
    
 0.546
zfand4
Zinc finger, AN1-type domain 4.
    
 0.545
mdm2
MDM2 proto-oncogene.
   
 0.510
rps27a
Ribosomal protein S27a.
    
  0.500
birc6
Baculoviral IAP repeat containing 6.
    
 0.483
LOC115247907
Si:dkey-181m9.8.
    
 0.472
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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