Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lmx1bLIM homeobox transcription factor 1, beta b. (377 aa)    
Predicted Functional Partners:
idi1
Isopentenyl-diphosphate delta isomerase 1.
    
   0.624
pbx3
Homeobox domain-containing protein.
    
 
 0.620
ldb2
LIM domain binding 2a.
    
 0.614
LOC101073193
LIM domain binding 1a.
    
 0.614
LOC101073193-2
LIM domain-binding protein 1.
    
 0.614
ldb1
LIM domain binding 1a.
    
 0.614
LOC101079168
Uncharacterized protein.
    
   0.572
drd3
Dopamine receptor D3; Belongs to the G-protein coupled receptor 1 family.
    
 
 0.549
tbx20
T-box transcription factor 20.
    
 0.544
mab21l2
Mab-21-like 2.
    
 
 0.535
Your Current Organism:
Takifugu rubripes
NCBI taxonomy Id: 31033
Other names: Fugu rubripes, Sphaeroides rubripes, T. rubripes, Tetraodon rubripes, tiger puffer, torafugu
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